# Index

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

## T

target - Variable in class edu.claflin.finder.logic.cygrouper.CygrouperEdge
target - Variable in class edu.claflin.finder.logic.Edge
  The node representing the target.
terminalLogs - Variable in class edu.claflin.finder.log.LogUtil
  The HashMap used for determining which of the logging outputs are logged to the terminal.
Tester - Class in edu.claflin.finder.algo.clustering.struct.infomap_struct
Tester - Class in edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct
Tester - Class in edu.claflin.finder.algo.clustering.struct.louvain_struct
Tester() - Constructor for class edu.claflin.finder.algo.clustering.struct.infomap_struct.Tester
Tester() - Constructor for class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Tester
Tester() - Constructor for class edu.claflin.finder.algo.clustering.struct.louvain_struct.Tester
testFile(File) - Static method in class edu.claflin.finder.io.graph.SIFGraphIO
  Tests to see if a File is a valid graph file.
testFile(File) - Static method in class edu.claflin.finder.io.graph.SimpleGraphIO
  Tests to see if a File is a valid graph file.
testRandomWalker(Graph) - Static method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength
threshold - Variable in class edu.claflin.finder.algo.spanningtree.ExtremumSpanningTree
times(double) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Multiply a matrix by a scalar, C = s*A
times(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Linear algebraic matrix multiplication, A * B
timesEquals(double) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Multiply a matrix by a scalar in place, A = s*A
TOP - Static variable in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap
toString() - Method in enum edu.claflin.finder.algo.ArgumentsBundle.COMMON_ARGS
toString() - Method in class edu.claflin.finder.algo.ArgumentsBundle
toString() - Method in class edu.claflin.finder.algo.BreadthFirstTraversalSearch
toString() - Method in class edu.claflin.finder.algo.BronKerbosch
toString() - Method in class edu.claflin.finder.algo.Bundle
toString() - Method in class edu.claflin.finder.algo.clustering.Communities
toString() - Method in class edu.claflin.finder.algo.clustering.FastGreedy
toString() - Method in class edu.claflin.finder.algo.clustering.GirvanNewman
toString() - Method in class edu.claflin.finder.algo.clustering.Infomap
toString() - Method in class edu.claflin.finder.algo.clustering.LabelPropagation
toString() - Method in class edu.claflin.finder.algo.clustering.LeadingEigenvector
toString() - Method in class edu.claflin.finder.algo.clustering.Louvain
toString() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
  Gets an inorder String representation of the BinarySearchTree.
toString() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG
toString() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapNode
toString() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapQueue
toString() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix
toString() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.TreeNodeInfoFG
toString() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.VectorValue
toString() - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.BetweennessCentrality.BetweennessData
toString() - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode
toString() - Method in class edu.claflin.finder.algo.clustering.struct.TreeNodeInfo
toString() - Method in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT
toString() - Method in class edu.claflin.finder.algo.clustering.Walktrap
toString() - Method in class edu.claflin.finder.algo.ConnectedComponentsDFS
toString() - Method in class edu.claflin.finder.algo.DepthFirstTraversalSearch
toString() - Method in class edu.claflin.finder.algo.shortestpath.DijkstraShortestPath
toString() - Method in class edu.claflin.finder.algo.spanningtree.Kruskal
toString() - Method in class edu.claflin.finder.algo.spanningtree.Prim
toString() - Method in enum edu.claflin.finder.log.LogLevel
toString() - Method in enum edu.claflin.finder.log.LogType
  Used to get a user friendly version of the LogType.
toString() - Method in class edu.claflin.finder.logic.cond.BipartiteCondition
toString() - Method in class edu.claflin.finder.logic.cond.CliqueCondition
toString() - Method in class edu.claflin.finder.logic.cond.DirectedCliqueCondition
toString() - Method in class edu.claflin.finder.logic.ConditionedGraph
toString() - Method in class edu.claflin.finder.logic.cygrouper.CygrouperEdge
toString() - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode
toString() - Method in class edu.claflin.finder.logic.Edge
toString() - Method in class edu.claflin.finder.logic.Graph
  Returns a String representation of the Graph.
toString() - Method in class edu.claflin.finder.logic.Node
toString() - Method in class edu.claflin.finder.struct.DisjointSet
toString(TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
  Recursive implementation of inorder toString.
toStringNameless() - Method in class edu.claflin.finder.logic.Graph
totalExitCodes(Map<Integer, Integer>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength
totalExitWeight - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength
totalModuleCode(Map<Integer, List<Node>>, Map<Integer, Integer>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength
totalModuleFreq(Map<Integer, Integer>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength
totalModuleNodeFreq(List<Node>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength
totalNodeFreq(List<Node>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength
totalWeight - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength
tql2() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition
trace() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Matrix trace.
transpose() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Matrix transpose.
transpose(int, int) - Method in class edu.claflin.finder.logic.Graph
  Transposes the specified nodes.
transpose(Node, Node) - Method in class edu.claflin.finder.logic.Graph
  Transposes the specified nodes.
transpose(String, String) - Method in class edu.claflin.finder.logic.Graph
  Deprecated.
  Outdated since v3. Replaced by {}
traverseGraph - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapAlgorithm
tred2() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition
tree - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapAlgorithm
tree - Variable in class edu.claflin.finder.logic.cygrouper.CytogrouperMain
TreeNode<T extends TreeNodeInfo> - Class in edu.claflin.finder.algo.clustering.struct
  The basic unit of the BinarySearchTree.
TreeNode() - Constructor for class edu.claflin.finder.algo.clustering.struct.TreeNode
TreeNode(T) - Constructor for class edu.claflin.finder.algo.clustering.struct.TreeNode
  Create an empty TreeNode.
TreeNode(T, TreeNode<T>, TreeNode<T>) - Constructor for class edu.claflin.finder.algo.clustering.struct.TreeNode
TreeNodeInfo - Class in edu.claflin.finder.algo.clustering.struct
TreeNodeInfo(int) - Constructor for class edu.claflin.finder.algo.clustering.struct.TreeNodeInfo
TreeNodeInfoFG - Class in edu.claflin.finder.algo.clustering.struct.fast_greedy_struct
TreeNodeInfoFG(int, double) - Constructor for class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.TreeNodeInfoFG
trees - Variable in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form