# Index

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## A

a - Variable in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.VectorValue
a(List<Node>) - Method in class edu.claflin.finder.algo.clustering.Communities
  Fraction of edges incident to Nodes in the given Community.
A - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Array for internal storage of elements.
add(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapQueue
add(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix
  Add the given j index, q value pair to the ith tree and heap
add(T) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
  Addd a new Tree Node with the given j index and q value
add(T) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap
add(T) - Method in class edu.claflin.finder.struct.PrioritySet
  Allows additions of items that already has a copy within the set (determined by obj.equals(obj2) ) and their subsequent replacement if they are of lesser value than the new object as determined by the queue's comparator.
add(T, TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
  Recursive implementation of add.
addCondition(Condition) - Method in class edu.claflin.finder.algo.ArgumentsBundle
  Adds a Condition to the conditionsList.
addCondition(Condition) - Method in class edu.claflin.finder.logic.ConditionedGraph
  Adds a condition to the graph.
addEdge(int, int, Double) - Method in class edu.claflin.finder.logic.Graph
  Deprecated.
  Outdated since v3. Replaced by {}
addEdge(Edge) - Method in class edu.claflin.finder.logic.Graph
  Adds an edge to the Graph.
addEdge(Edge) - Method in class edu.claflin.finder.logic.Node
  Add an Edge to the Node and increase the other statistics accordingly.
addEdge(String, String, Double) - Method in class edu.claflin.finder.logic.Graph
  Deprecated.
  Outdated since v3. Replaced by {
addEdges(List<Edge>) - Method in class edu.claflin.finder.logic.Graph
  Adds a list of Edges to the graph.
addEdgesInParititeSet(Graph, List<Node>) - Method in class edu.claflin.finder.algo.BronKerbosch
  Adds edges to a Graph between all Nodes in a partite set.
addHeap(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix
  Add the given j index, q value pair to the ith heap.
addMember(Node) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.ModuleNode
addNewNode(String) - Method in class edu.claflin.finder.logic.Graph
  Deprecated.
  Outdated since v3. Replaced by {}
addNode(Node) - Method in class edu.claflin.finder.logic.Graph
  Adds a node to the graph.
addNodes(List<Node>) - Method in class edu.claflin.finder.logic.Graph
  Adds a list of nodes to the graph.
addOverride - Variable in class edu.claflin.finder.struct.PrioritySet
  Boolean indicating if newer elements with a greater compare value should replace others.
addPartialGraph(List<Node>, List<Edge>) - Method in class edu.claflin.finder.logic.ConditionedGraph
  Adds a partial graph to this graph.
addPartialGraph(List<Node>, List<Edge>) - Method in class edu.claflin.finder.logic.Graph
  Adds a partial graph to this graph.
addPropertyChangeListener(PropertyChangeListener) - Method in class edu.claflin.finder.algo.Algorithm
  Adds a PropertyChangeListener.
addTree(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix
  Add the given j index, q value pair to the ith tree.
adjacencyMatrix - Variable in class edu.claflin.finder.algo.clustering.struct.louvain_struct.LouvainAlgorithm
ALGO - Enum constant in enum edu.claflin.finder.log.LogType
Algorithm - Class in edu.claflin.finder.algo
  Abstraction of the algorithm classes used for finding subgraphs.
Algorithm(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.Algorithm
  Public Constructor for creating an Algorithm.
Algorithm.GraphSortOrder - Enum in edu.claflin.finder.algo
algorithms - Variable in class edu.claflin.finder.algo.Bundle
  The `Algorithm` array containing the algorithms to process graphs with.
allow_duplicates - Variable in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
allows_duplicates() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
args - Variable in class edu.claflin.finder.algo.Algorithm
  The ArgumentsBundle object holding arguments for the algorithm.
ArgumentsBundle - Class in edu.claflin.finder.algo
  Used to supply arguments to Algorithms in a generalized manner.
ArgumentsBundle() - Constructor for class edu.claflin.finder.algo.ArgumentsBundle
  Constructs the ArgumentsBundle.
ArgumentsBundle.COMMON_ARGS - Enum in edu.claflin.finder.algo
  An enumeration containing common arguments used by the program.
arrayLeftDivide(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Element-by-element left division, C = A.\B
arrayLeftDivideEquals(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Element-by-element left division in place, A = A.\B
arrayRightDivide(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Element-by-element right division, C = A./B
arrayRightDivideEquals(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Element-by-element right division in place, A = A./B
arrayTimes(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Element-by-element multiplication, C = A.*B
arrayTimesEquals(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Element-by-element multiplication in place, A = A.*B
arrayToString(double[]) - Static method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Tester
arrayToString(double[]) - Static method in class edu.claflin.finder.algo.clustering.struct.louvain_struct.Tester
arrayToString(int[]) - Static method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Tester
arrayToString(int[]) - Static method in class edu.claflin.finder.algo.clustering.struct.louvain_struct.Tester
ascending - Variable in class edu.claflin.finder.logic.comp.EdgeWeightComparator
  Indicates if the comparator should sort elements in ascending order.
ASCENDING - Enum constant in enum edu.claflin.finder.algo.Algorithm.GraphSortOrder
asList() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
asList(List<T>, TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
assembleMap(List<CygrouperEdge>, Map) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperAssembler
assmbleNodes(List<CygrouperEdge>, Map) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperAssembler
AVERAGE_WEIGHT - Enum constant in enum edu.claflin.finder.algo.Algorithm.GraphSortOrder
avgBitLength() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength
  Calculates average bit length for random path of this graph
AvgBitLength - Class in edu.claflin.finder.algo.clustering.struct.infomap_struct
AvgBitLength(Graph, Map<Integer, List<Node>>) - Constructor for class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength
AvgBitLength(ArrayList<Node>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapAlgorithm

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form