# Index

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

## S

satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.BipartiteCondition
  Used to test if the supplied graph is within the bounds of the condition's implementation.
satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.CliqueCondition
  Used to test if the supplied graph is within the bounds of the condition's implementation.
satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.DirectedCliqueCondition
  Used to test if the supplied graph is within the bounds of the condition's implementation.
satisfies(Graph) - Method in class edu.claflin.finder.logic.Condition
  Used to test if the supplied graph is within the bounds of the condition's implementation.
searchNode(Graph, Graph, Node, List<Node>) - Method in class edu.claflin.finder.algo.DepthFirstTraversalSearch
  Helper method to search for the SubGraphs in Depth First search.
searchNode(Graph, Node) - Method in class edu.claflin.finder.algo.BreadthFirstTraversalSearch
  Helper method to search for the SubGraphs in Breadth First Search.
serialVersionUID - Static variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition
serialVersionUID - Static variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
serialVersionUID - Static variable in class edu.claflin.finder.struct.PrioritySet
set(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix
  Set the q value at the ith tree and heap's j column.
set(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Set a single element.
set(T) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
setA(double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.VectorValue
setc1(double) - Method in class edu.claflin.finder.algo.clustering.Walktrap.MutualConnectionsRecord
setc2(double) - Method in class edu.claflin.finder.algo.clustering.Walktrap.MutualConnectionsRecord
setComparator() - Method in class edu.claflin.finder.algo.BreadthFirstTraversalSearch
setComparator() - Method in class edu.claflin.finder.algo.DepthFirstTraversalSearch
setData(Double) - Method in class edu.claflin.finder.logic.Edge
  Access method for the Edge's data (such as weight).
setFileLogs(boolean[]) - Method in class edu.claflin.finder.log.LogUtil
  Sets the FileLogs HashMap for selective logging to the file.
setForceOnAdd(boolean) - Method in class edu.claflin.finder.logic.ConditionedGraph
  Accessor method for configuring if conditions are forced on add of network components.
setFreq(int) - Method in class edu.claflin.finder.algo.huffman.HuffmanNode
setGraph(Graph) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength
setGraphSortOrder(Algorithm.GraphSortOrder) - Method in class edu.claflin.finder.algo.Algorithm
setGroup(String) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode
setGroups(ArrayList<Map<String, CygrouperNode>>) - Method in interface edu.claflin.finder.logic.cygrouper.CommunicationListener
setGroups(ArrayList<Map<String, CygrouperNode>>) - Method in class edu.claflin.finder.logic.cygrouper.Communicator
setHeap(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix
  Set the value q and the ith heap's j column.
setI(int) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapNode
setIndex(int) - Method in class edu.claflin.finder.algo.clustering.struct.TreeNodeInfo
setIndex1(int) - Method in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT
setIndex2(int) - Method in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT
setInfo(int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG
setInfo(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapNode
setInfo(T) - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode
  Set the information of this TreeNode.
setIntegerIdentifier(int) - Method in class edu.claflin.finder.logic.Node
setJ(int) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG
setLeft(HuffmanNode) - Method in class edu.claflin.finder.algo.huffman.HuffmanNode
setLeftChild(TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode
  Set the left child TreeNode.
setMatrix(int[], int[], Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Set a submatrix.
setMatrix(int[], int, int, Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Set a submatrix.
setMatrix(int, int, int[], Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Set a submatrix.
setMatrix(int, int, int, int, Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Set a submatrix.
setMinNodeCount(int) - Method in class edu.claflin.finder.algo.Algorithm
setModules(Map<Integer, List<Node>>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength
setName(String) - Method in class edu.claflin.finder.algo.huffman.HuffmanNode
setNode(T, TreeNode<T>, TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode
  Set all the information of this TreeNode.
setNodeToModule(Map<Node, Integer>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength
setOutput(File) - Static method in class edu.claflin.finder.Global
  Sets the output directory for storing results.
setPartiteNumber(int) - Method in class edu.claflin.finder.algo.Algorithm
setPartiteNumber(int) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode
setPartitionNumbers(ArrayList<Map<String, CygrouperNode>>) - Method in interface edu.claflin.finder.logic.cygrouper.CommunicationListener
setPartitionNumbers(ArrayList<Map<String, CygrouperNode>>) - Method in class edu.claflin.finder.logic.cygrouper.Communicator
setProgress(double) - Method in class edu.claflin.finder.algo.Algorithm
setQ(double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG
setQ(double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.TreeNodeInfoFG
setRight(HuffmanNode) - Method in class edu.claflin.finder.algo.huffman.HuffmanNode
setRightChild(TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode
  Set the right child TreeNode.
setSigma(double) - Method in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT
setTerminalLogs(boolean[]) - Method in class edu.claflin.finder.log.LogUtil
  Sets the TerminalLogs HashMap for selective terminal logging.
setTree(int, int, double) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix
  Set value q and the ith tree's j column.
setUndirected(boolean) - Method in class edu.claflin.finder.logic.Edge
  Access method for the Edge's undirectedness parameter.
setUniqueSubGraphs(ArrayList<Graph>) - Method in interface edu.claflin.finder.logic.cygrouper.CommunicationListener
setUniqueSubGraphs(ArrayList<Graph>) - Method in class edu.claflin.finder.logic.cygrouper.Communicator
setWeightName(String) - Method in class edu.claflin.finder.algo.Algorithm
ShortestPath - Class in edu.claflin.finder.algo.shortestpath
ShortestPath(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.shortestpath.ShortestPath
  Public Constructor for creating Shortest Path Algorithm.
showTree(HuffmanNode, String) - Method in class edu.claflin.finder.algo.huffman.HuffmanCode
SIFGraphIO - Class in edu.claflin.finder.io.graph
  A class for reading and writing graphs in the SIF format.
SIFGraphIO() - Constructor for class edu.claflin.finder.io.graph.SIFGraphIO
sigma - Variable in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT
sigmaNotationPa(ArrayList<Double>, int) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation
sigmaNotationPaLogPa(ArrayList<Double>, int) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation
sigmaNotationQi(ArrayList<Double>, int) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation
sigmaNotationQiLogQi(ArrayList<Double>, int) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation
SigmaNotationWiyLogWiy(int, ArrayList<Double>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation
SigmaWaLogWa(int, ArrayList<Double>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation
SigmaWyLogSigmaWy(int, ArrayList<Double>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.MapEquation
SimpleGraphIO - Class in edu.claflin.finder.io.graph
  A class for reading and writing graphs.
SimpleGraphIO() - Constructor for class edu.claflin.finder.io.graph.SimpleGraphIO
size - Variable in class edu.claflin.finder.struct.DisjointSet
size() - Method in class edu.claflin.finder.algo.clustering.Communities
size() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapQueue
size() - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap
size() - Method in class edu.claflin.finder.struct.DisjointSet
  Get the number of disjoint sets.
sortOrder - Variable in class edu.claflin.finder.algo.Algorithm
source - Variable in class edu.claflin.finder.logic.cygrouper.CygrouperEdge
source - Variable in class edu.claflin.finder.logic.Edge
  The node representing the source.
SpanningTreeDriver - Class in edu.claflin.finder
SpanningTreeDriver() - Constructor for class edu.claflin.finder.SpanningTreeDriver
SparseMatrix - Class in edu.claflin.finder.algo.clustering.struct.fast_greedy_struct
  SparseMatrix is a sparse matrix with row format.
SparseMatrix(int) - Constructor for class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix
  empty sparse matrix with allocated number of rows
split(int) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm
startNode - Variable in class edu.claflin.finder.algo.spanningtree.Prim
startSearch(PrioritySet<Prim.DistanceRecord>, List<Node>, List<Node>, Graph) - Method in class edu.claflin.finder.algo.spanningtree.Prim
stepOptimization() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm
steps - Variable in class edu.claflin.finder.algo.clustering.Walktrap
sum(Map<Integer, Double>, Map<Integer, Double>) - Static method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength
superAddPartialGraph(List<Node>, List<Edge>) - Method in class edu.claflin.finder.logic.ConditionedGraph
  Private method for circumventing the condition restrictions.
suppressLog - Variable in class edu.claflin.finder.logic.Graph
  Used to suppress logging.
swap(int, int) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap
SwapInfo(int, int, double) - Constructor for class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm.SwapInfo

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form