# Index

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

## C

c1sigma - Variable in class edu.claflin.finder.algo.clustering.Walktrap.MutualConnectionsRecord
c2sigma - Variable in class edu.claflin.finder.algo.clustering.Walktrap.MutualConnectionsRecord
calculateModuleExitWeights() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength
calculateModuleWeights() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength
calculateNewModule(Map<Node, Integer>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength
calculateRelativeWeights() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength
calculateTotalExitWeight() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength
calculateTotalWeight() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength
cdiv(double, double, double, double) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition
cdivi - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition
cdivr - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition
checkMatrixDimensions(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Check if size(A) == size(B)
checkNode(Node) - Method in class edu.claflin.finder.logic.Graph
  Verifies that the node is NOT in the graph.
checkNodeGroupings(Graph) - Method in class edu.claflin.finder.algo.MatrixPatternAnalyzer
  Deprecated.
  Step 2: Iterate on Step 1 through all contiguous node groupings.
checkNodeIndex(int) - Method in class edu.claflin.finder.logic.Graph
  Deprecated.
  No replacement. Further operations shall utilize {)}
checkSubGraphs(Graph, int) - Method in class edu.claflin.finder.algo.MatrixPatternAnalyzer
  Deprecated.
  Step 3: Repeat Step 2 for each "Cornered" Sub-matrix of the original Graph.
checkZeroMatrices(Graph, int) - Method in class edu.claflin.finder.algo.MatrixPatternAnalyzer
  Deprecated.
  Step 1: Check for valid 0 Sub-matrices.
clear() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
clear() - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap
clearRow(int) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix
  Clear the ith tree and heap
CliqueCondition - Class in edu.claflin.finder.logic.cond
  Represents a Clique condition.
CliqueCondition() - Constructor for class edu.claflin.finder.logic.cond.CliqueCondition
clone() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Clone the Matrix object.
closestReachableUnvisited(HashMap<Node, Double>, Graph, Set<String>) - Method in class edu.claflin.finder.algo.shortestpath.DijkstraShortestPath
cluster() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapImplementation
ClusteringAlgorithm - Class in edu.claflin.finder.algo.clustering
ClusteringAlgorithm(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.clustering.ClusteringAlgorithm
codeLengthThreshold - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapImplementation
COMMON_ARGS(String) - Constructor for enum edu.claflin.finder.algo.ArgumentsBundle.COMMON_ARGS
CommunicationListener - Interface in edu.claflin.finder.logic.cygrouper
communicator - Static variable in class edu.claflin.finder.logic.cygrouper.Communicator
Communicator - Class in edu.claflin.finder.logic.cygrouper
Communicator() - Constructor for class edu.claflin.finder.logic.cygrouper.Communicator
communities - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapAlgorithm
communities - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm
communities - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorCaller
communities - Variable in class edu.claflin.finder.algo.clustering.struct.louvain_struct.LouvainAlgorithm
Communities - Class in edu.claflin.finder.algo.clustering
Communities(Graph, boolean) - Constructor for class edu.claflin.finder.algo.clustering.Communities
  Constructor to initialize 1-Node Communities from a Graph.
Communities(Map<Integer, List<Node>>, Graph, boolean) - Constructor for class edu.claflin.finder.algo.clustering.Communities
  Constructor to create Communities from existing Community group.
Communities(Map<Integer, List<Node>>, Graph, boolean, double) - Constructor for class edu.claflin.finder.algo.clustering.Communities
  Constructor called by copy().
communitiesToString(HashMap<Integer, List<Node>>) - Static method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Tester
communitiesToString(HashMap<Integer, List<Node>>, Graph) - Static method in class edu.claflin.finder.algo.clustering.struct.louvain_struct.Tester
community - Variable in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.VectorValue
comp - Variable in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap
ComparableComparator() - Constructor for class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap.ComparableComparator
comparator - Variable in class edu.claflin.finder.algo.BreadthFirstTraversalSearch
comparator - Variable in class edu.claflin.finder.algo.DepthFirstTraversalSearch
compare(HuffmanNode, HuffmanNode) - Method in class edu.claflin.finder.logic.comp.HuffComparator
compare(Prim.DistanceRecord, Prim.DistanceRecord) - Method in class edu.claflin.finder.algo.spanningtree.Prim.DistanceRecordComparator
compare(Edge, Edge) - Method in class edu.claflin.finder.logic.comp.EdgeWeightComparator
  Compares the edges based on the D data held by the edge.
compare(Graph, Graph) - Method in class edu.claflin.finder.algo.Algorithm
  Compares the two graphs based on edges.
compare(Graph, Graph) - Method in class edu.claflin.finder.logic.comp.GraphAverageWeightComparator
compare(Graph, Graph) - Method in class edu.claflin.finder.logic.comp.GraphSizeComparator
compare(Node, Node) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.BetweennessCentrality.BetweennessComparator
compare(T, T) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap.ComparableComparator
compareTo(HeapNodeFG) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG
  Compare this HeapNode to that HeapNode.
compareTo(HeapNodeFG) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapNode
compareTo(TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode
compareTo(TreeNodeInfo) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.TreeNodeInfoFG
compareTo(HeapNodeWT) - Method in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT
compareTo(Node) - Method in class edu.claflin.finder.logic.Node
compareToQ(HeapNodeFG) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG
components - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorCaller
ComponentsDriver - Class in edu.claflin.finder
ComponentsDriver() - Constructor for class edu.claflin.finder.ComponentsDriver
computeBetweenness(Queue<Node>) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.BetweennessCentrality
Condition - Class in edu.claflin.finder.logic
  Represents a graph condition in memory.
Condition() - Constructor for class edu.claflin.finder.logic.Condition
ConditionedGraph - Class in edu.claflin.finder.logic
  Represents a "conditioned" graph.
ConditionedGraph(Graph, Collection<Condition>) - Constructor for class edu.claflin.finder.logic.ConditionedGraph
  Private constructor used to create copies of ConditionedGraph objects.
ConditionedGraph(String) - Constructor for class edu.claflin.finder.logic.ConditionedGraph
  Public constructor for creating a simple ConditionedGraph.
ConditionedGraph(String, Collection<Condition>) - Constructor for class edu.claflin.finder.logic.ConditionedGraph
  Public constructor for creating a ConditionedGraph.
ConditionedGraph(String, Collection<Condition>, boolean) - Constructor for class edu.claflin.finder.logic.ConditionedGraph
  Public constructor for creating a ConditionedGraph.
conditionOther(Graph) - Method in class edu.claflin.finder.logic.ConditionedGraph
  Private method used for copying the ConditionedGraph.
conditions - Variable in class edu.claflin.finder.logic.ConditionedGraph
  The List of Conditions applied to this Graph.
conditionsList - Variable in class edu.claflin.finder.algo.ArgumentsBundle
  The List of conditions to apply to the Algorithm.
connectedCommunities(List<Node>, List<Node>) - Method in class edu.claflin.finder.algo.clustering.Communities
  Determine whether 2 Communities are connected.
ConnectedComponentsDFS - Class in edu.claflin.finder.algo
  Processes a `Graph` searching for connected components by performing a depth first search.
ConnectedComponentsDFS(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.ConnectedComponentsDFS
  Public constructor for initializing the DepthFirstTraversalSearch with default conditions.
connections - Variable in class edu.claflin.finder.logic.cygrouper.CygrouperNode
constructWithCopy(double[][]) - Static method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Construct a matrix from a copy of a 2-D array.
contains(Object) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap
contains(T) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
  Is the specified ElemntType in the BinarySearchTree?
contains(T) - Method in class edu.claflin.finder.struct.DisjointSet
  Whether the given object is in the disjoint sets.
contains(T, TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
containsKey(Integer) - Method in class edu.claflin.finder.algo.clustering.Communities
  Whether the Community structure contains the given community index.
containsNode(Node) - Method in class edu.claflin.finder.logic.Graph
  Checks if the graph contains the given node.
convertCyfinderEdge(String, String) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperAssembler
copy() - Method in class edu.claflin.finder.algo.clustering.Communities
copy() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Make a deep copy of a matrix
copy() - Method in class edu.claflin.finder.logic.ConditionedGraph
  Copies this Graph object using the getSubGraph() method.
copy() - Method in class edu.claflin.finder.logic.Graph
  Copies this Graph object using the getSubGraph() method.
cprobs(List<Node>, Graph, List<Node>) - Method in class edu.claflin.finder.algo.clustering.Walktrap
  Get a probability vector for a community.
createBackbone() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
  Time complexity: O(n)
createPerfectBST() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
  Time complexity: O(n)
crosstalk(Graph, Graph) - Method in class edu.claflin.finder.logic.Graph
  Crosstalk of 2 subgraphs of this Graph.
cull(ArrayList<Graph>) - Method in class edu.claflin.finder.algo.Algorithm
  Removes duplicate subGraphs from the provided ArrayList.
CygrouperAssembler - Class in edu.claflin.finder.logic.cygrouper
CygrouperAssembler(List<Edge>) - Constructor for class edu.claflin.finder.logic.cygrouper.CygrouperAssembler
CygrouperEdge - Class in edu.claflin.finder.logic.cygrouper
CygrouperEdge(String, String) - Constructor for class edu.claflin.finder.logic.cygrouper.CygrouperEdge
CygrouperNode - Class in edu.claflin.finder.logic.cygrouper
CygrouperNode(String) - Constructor for class edu.claflin.finder.logic.cygrouper.CygrouperNode
CytogrouperMain - Class in edu.claflin.finder.logic.cygrouper
CytogrouperMain(List<Graph>, CommunicationListener, int) - Constructor for class edu.claflin.finder.logic.cygrouper.CytogrouperMain

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form