# Index

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All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

## R

random(int, int) - Static method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Generate matrix with random elements
randomPath - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength
randomWalker(Graph) - Static method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.AvgBitLength
  Generates a path taken by random walker.
rChild(int) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap
read(BufferedReader) - Static method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix
  Read a matrix from a stream.
readManifest(File) - Static method in class edu.claflin.finder.io.ManifestParser
  Reads the manifest file.
rebuildHeap(int) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix
  Rebuild heap j with the tree j
RelativeUndirectedBitLength - Class in edu.claflin.finder.algo.clustering.struct.infomap_struct
RelativeUndirectedBitLength(Graph, Map<Node, Integer>) - Constructor for class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength
relativeWeights - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength
remove() - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap
remove(Object) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap
remove(T) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
remove(T, TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
remove_node(HeapNodeWT, PriorityQueue<HeapNodeWT>) - Method in class edu.claflin.finder.algo.clustering.Walktrap
  Remove a HeapNode from the Queue.
removeAll(Collection<?>) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap
removeBoolean(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle
  Removes a boolean from the booleanList.
removeCondition(Condition) - Method in class edu.claflin.finder.algo.ArgumentsBundle
  Removes a Condition from the conditionsList.
removeCondition(Condition) - Method in class edu.claflin.finder.logic.ConditionedGraph
  Removes a condition from the graph.
removeDouble(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle
  Removes a double from the doubleList.
removeEdge(Edge) - Method in class edu.claflin.finder.logic.Graph
removeEdge(Edge) - Method in class edu.claflin.finder.logic.Node
removeEdgesInPartiteSet(Graph, List<Node>) - Method in class edu.claflin.finder.algo.BronKerbosch
  Removes edges in a Graph between all Nodes in a partite set.
removeEdgesInvolving(Node) - Method in class edu.claflin.finder.logic.Graph
  Remove all the edges in which the given Node participates.
removeEnum(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle
  Removes an enum from the enumList.
removeFromTree(int, int) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix
removeInteger(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle
  Removes an integer from the integerList.
removeMember(Node) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.ModuleNode
removeNode(Node) - Method in class edu.claflin.finder.logic.Graph
  Removes a node from the set.
removeObject(String) - Method in class edu.claflin.finder.algo.ArgumentsBundle
  Removes an object from the enumList.
removePaths(Graph, Node, Node) - Method in class edu.claflin.finder.algo.shortestpath.ShortestPath
  Private class for removing visited paths that not reach the destination node.
removePropertyChangeListener(PropertyChangeListener) - Method in class edu.claflin.finder.algo.Algorithm
  Removes a PropertyChangeListener.
replaceNodes(List<IndexedHeapNode>) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapQueue
  Replace nodes in the queue with their counterparts in a given list, according to row number (i).
reportProblem(String, String) - Method in class edu.claflin.finder.log.LogUtil
  Used to report problems with the logging engine to the terminal.
results - Variable in class edu.claflin.finder.logic.cygrouper.CytogrouperMain
retainAll(Collection<?>) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap
right - Variable in class edu.claflin.finder.algo.clustering.struct.TreeNode
right - Variable in class edu.claflin.finder.algo.huffman.HuffmanNode
root - Variable in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
rotateLeft(TreeNode<T>, TreeNode<T>, TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
rotateRight(TreeNode<T>, TreeNode<T>, TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree
rows - Variable in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix
rows() - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix
  get the rows of the matrix

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form