File Structure

+ CyFinder
	Java Maven project that contains the skeleton of the CyFinder plugin.
	Generates jar file that can be imported into Cytoscape as a plugin. 
	Depends on the SubgraphFinder code.

+ SubgraphFinder
	Java Ant project that contains logic of the features (tools and algorithms) available in CyFinder.
	Generates jar file that is used by CyFinder project to execute necessary algorithms.

+ "SubgraphFinder/Test Graphs"
	Sample Networks to be imported to Cytoscape for testing and learning purposes.

Refer to "Documents/Installation Guide/How to compile CyFinder.pdf" for Cyfinder compilation steps
Refer to "Documents/Installation Guide/How to use CyFinder.pdf" for Cyfinder usage demo
Alternatively, refer to the videos.