A B C D E F G H I L M N O P Q R S T U V W

## S

satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.BipartiteCondition
satisfies(Graph, Set<Node>, Set<Node>, Node) - Method in class edu.claflin.finder.logic.cond.BipartiteCondition
  Private method for stepping through the adjacency lists and determining if the graph is bipartite.
satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.CliqueCondition
  Used to test if the supplied graph is within the bounds of the condition's implementation.
satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.DirectedCliqueCondition
  Used to test if the supplied graph is within the bounds of the condition's implementation.
satisfies(Graph) - Method in class edu.claflin.finder.logic.Condition
  Used to test if the supplied graph is within the bounds of the condition's implementation.
searchNode(Graph, Node) - Method in class edu.claflin.finder.algo.BreadthFirstTraversalSearch
  Helper method to search for the SubGraphs.
searchNode(Graph, Graph, Node, List<Node>) - Method in class edu.claflin.finder.algo.DepthFirstTraversalSearch
  Helper method to search for the SubGraphs.
setData(D) - Method in class edu.claflin.finder.logic.Edge
  Access method for the Edge's data (such as weight).
setFileLogs(boolean[]) - Method in class edu.claflin.finder.log.LogUtil
  Sets the FileLogs HashMap for selective logging to the file.
setForceOnAdd(boolean) - Method in class edu.claflin.finder.logic.ConditionedGraph
  Accessor method for configuring if conditions are forced on add of network components.
setGroup(String) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode
setGroups(ArrayList<Map<String, CygrouperNode>>) - Method in interface edu.claflin.finder.logic.cygrouper.CommunicationListener
setGroups(ArrayList<Map<String, CygrouperNode>>) - Method in class edu.claflin.finder.logic.cygrouper.Communicator
setOutput(File) - Static method in class edu.claflin.finder.Global
  Sets the output directory for storing results.
setProgress(double) - Method in class edu.claflin.finder.algo.Algorithm
setTerminalLogs(boolean[]) - Method in class edu.claflin.finder.log.LogUtil
  Sets the TerminalLogs HashMap for selective terminal logging.
setUndirected(boolean) - Method in class edu.claflin.finder.logic.Edge
  Access method for the Edge's undirectedness parameter.
setUniqueSubGraphs(ArrayList<Graph>) - Method in interface edu.claflin.finder.logic.cygrouper.CommunicationListener
setUniqueSubGraphs(ArrayList<Graph>) - Method in class edu.claflin.finder.logic.cygrouper.Communicator
SIFGraphIO - Class in edu.claflin.finder.io.graph
  A class for reading and writing graphs in the SIF format.
SIFGraphIO(String) - Constructor for class edu.claflin.finder.io.graph.SIFGraphIO
  Constructs the SIFGraphIO object.
SimpleGraphIO - Class in edu.claflin.finder.io.graph
  A class for reading and writing graphs.
SimpleGraphIO() - Constructor for class edu.claflin.finder.io.graph.SimpleGraphIO
  Empty Constructor for instantiating the class.
source - Variable in class edu.claflin.finder.logic.cygrouper.CygrouperEdge
source - Variable in class edu.claflin.finder.logic.Edge
  The node representing the source.
superAddPartialGraph(List<Node>, List<Edge>) - Method in class edu.claflin.finder.logic.ConditionedGraph
  Private method for circumventing the condition restrictions.
suppressLog - Variable in class edu.claflin.finder.logic.Graph
  Used to suppress logging.

A B C D E F G H I L M N O P Q R S T U V W