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## M

Main - Class in edu.claflin.finder
  Interprets the command line arguments provided to the program.
Main() - Constructor for class edu.claflin.finder.Main
main(String[]) - Static method in class edu.claflin.finder.Main
  Command line argument processing occurs here.
makeLogger(LogLevel, boolean[], boolean[]) - Static method in class edu.claflin.finder.Global
  Instantiates the logger field.
ManifestParser - Class in edu.claflin.finder.io
  Reads manifest files.
ManifestParser() - Constructor for class edu.claflin.finder.io.ManifestParser
  Private constructor for preventing instantiation of the class.
map - Variable in class edu.claflin.finder.logic.cygrouper.CygrouperAssembler
MatrixPatternAnalyzer - Class in edu.claflin.finder.algo
  Deprecated.
  No replacement yet. Inefficient and utilizes old algorithm strategy.
MatrixPatternAnalyzer() - Constructor for class edu.claflin.finder.algo.MatrixPatternAnalyzer
  Deprecated.
  Public constructor for initializing the analyzer.
maxGranularity - Variable in class edu.claflin.finder.log.LogUtil
  The maximum granularity of the logging utility.
mPCS - Variable in class edu.claflin.finder.algo.Algorithm
  Adds Property Change support to track the progress of algorithms.

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